Chapter 9 References

Ben J. Callahan, Julia A. Fukuyama, Kris Sankaran. 2016. “Bioconductor Workflow for Microbiome Data Analysis: From Raw Reads to Community Analyses [Version 2; Referees: 3 Approved].” F1000Research 5 (1492). https://doi.org/10.12688/f1000research.8986.2.

Bioconductor. 2020. “Bioconductor: Using Bioconductor.” Online.

Callahan, Benjamin. n.d. DADA2 Pipeline Tutorial (1.12).

McLaren, Michael R. 2020. “Silva SSU taxonomic training data formatted for DADA2 (Silva version 138).” Zenodo. https://doi.org/10.5281/zenodo.3731176.

McMurdie, Paul J. n.d. Phyloseq: Explore Microbiome Profiles Using R.

Sally Temraz, Rihab Nasr, Farah Nassar. 2019. “Gut Microbiome: A Promising Biomarker for Immunotherapy in Colorectal Cancer.” International Journal of Molecular Sciences 20 (17). https://doi.org/10.3390/ijms20174155.